Nyström M, Folke C, Moberg F (2000). Coral reef disturbance and resilience in a human dominated environment. Trends in Ecology and Evolution, 15: 413-417.

McClanahan TR, Bergman K, Huitric M, McField M, Elfwing T, Nyström M, Nordemar I. (2000). Response of fishes to algal reduction on Glovers Reef, Belize. Marine Ecology Progress Series, 206: 273-282.
 
Nyström M, Folke C, Moberg F (2001). Corals and phase shifts. Reply to Ostrander et al. Trends in Ecology and Evolution, 16: 127.
 
McClanahan TR, McField M, Huitric M, Bergman K, Sala E, Nyström M, Nordemar I,
Elfwing T. (2001) Responses of algae, corals and fish to the reduction of macroalgae in fished and unfished patch reefs of Glovers Reef Atoll, Belize. Coral Reefs, 19: 367-379.
 
Nyström M, Folke C (2001). Spatial Resilience of Coral Reefs. Ecosystems, 4: 406-417.
 
Nyström M, Nordemar I, Tedengren M (2001) Simultaneous and sequential stress from heat and copper on the metabolism of Porites cylindrica. Marine Biology, 138: 1225-1231.
 
Alutoin S, Boberg J, Nyström M, Tedengren M (2001) Effects of the multiple stressors copper and reduced salinity on the metabolism of the hermatypic coral Porites lutea. Marine Environmental Research, 52: 289-299.
 
Nordemar I, Nyström M, Dizon R (2003). Effects of elevated seawater temperature and nitrate enrichment on the branching coral Porites cylindrica in the absence of particulate food. Marine Biology, 142: 669-677.
 
Bengtsson J, Angelstam P, Elmqvist T, Emanuelsson U, Folke C, Ihse M, Moberg F, Nyström M (2003). Reserves, resilience and dynamic landscapes. Ambio, 32: 389-396.
 
Råberg S., Nyström M., Erös M., Plantman P (2003). The impact of the two herbicides 2,4-D and diuron on the metabolism of the coral Porites cylindrica. Marine Environmental Research, 56: 503-514.
 
Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R,
Hoegh-Guldberg O, Jackson JBC, Kleypas J, Lough JM, Marshall P, Nyström M, Palumbi SR, Pandolfi JM, Rosen B, Roughgarden J (2003). Climate change, human impacts, and the resilience of coral reefs. Science, 301: 929-933.
 
Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R,
Hoegh-Guldberg O, Jackson JBC, Kleypas J, Lough JM, Marshall P, Nyström M, Palumbi SR, Pandolfi JM, Rosen B, Roughgarden J (2003). Climate change, human impacts, and the resilience of coral reefs. Reply to Aronson et al. Science, 302: 1502-1504.
 
Elmqvist T, Folke C, Nyström M, Peterson G, Bengtsson J, Walker B, Norberg J (2003). Response diversity, ecosystem change, and resilience. Frontiers in Ecology and the Environment, 1: 488-496.

Bellwood DR, Hughes TP, Folke C, Nyström M (2004). Confronting the coral reef crisis: supporting biodiversity, functional groups and resilience. Nature 429: 827-833.
 
Nyström M. (2006) Redundancy and response diversity of functional groups: implications for resilience of coral reefs. Ambio 35: 30-35.
 
Berkes F, Hughes TP, Steneck RS, Wilson J, Bellwood DR, Crona B, Folke C,
Gunderson LH, Leslie HM, Norberg J,. Nyström M, Olsson P, Österblom H, Scheffer
M, Worm B. (2006) Globalization, roving bandits and marine resources. Science 311:
1557-1558.
 
Norström A.V., Lokrantz J, Yap H.T., Nyström M. (2007) The influence of substrate morphology on coral recruitment. Marine Biology 150: 1145-1152.
 
Tittensor D., Fiorenza Micheli, Nyström M., Worm B. (2007). Human impacts on the species-area relationship in reef fish assemblages. Ecology Letters 10: 760-772.
 
Hughes TP, Gunderson L, Folke C, Baird A, Bellwood D, Berkes F, Crona B,
Helfgott A, Leslie H, Norberg J, Nyström M, Olsson P, Österblom H, Scheffer
M, Schuttenberg H, Steneck RS, Tengö M, Troell M, Walker B, Wilson J,
Worm B. (2007) Adaptive management of the Great Barrier Reef and the
Grand Canyon World Heritage Area. Ambio 36: 586-592.
 
Nyström M, Graham N.A.J., Lokrantz J., Nortröm A.V. (2008) Capturing the cornerstones of coral reef resilience: linking theory to practice. Coral Reefs 27: 795-809.
 
Lokrantz J, Nyström M., Thyresson C, Johansson C. (2008) The Non-linear relationship between body size and function in parrotfishes. Coral Reefs 27: 967-974.
 
Norström A.V. Nyström M., Lokrantz J., Folke C. (In press) Multiple alternative states on coral reefs: beyond coral-macroalgal phase shifts. Marine Ecology Progress Series.
 
Galaz V., Crona B., Daw T., Bodin Ö, Nyström M., Olsson P. Can Web crawlers Revolutionize Ecological Monitoring? Frontiers in Ecology and the Environment.

Lokrantz J, Nyström M., Thyresson M., Johansson C., 2008, The non-linear relationship between body-size and function in parrotfishes. Coral Reefs 27: 967-974.

Nyström, M., Graham, N., Lokrantz, J., Norström, A., 2008, Capturing the Cornerstones of Coral Reef Resilience - Linking Theory to Practice. Coral Reefs. October 1st, DOI: 10.1007/s00338-008-0426-z.